PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g031080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 382aa    MW: 41749.6 Da    PI: 6.7913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g031080.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.1e-10225273355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Sopen04g031080.1 225 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 273
                       58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-11220277No hitNo description
SuperFamilySSF474595.1E-17220290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472222272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16222290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7225273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10228278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGTKETGSFN CPSTGMNRAD SMPNVDPFSG SGWDPLLSLN QKGGFKGSSV VGHNEFVNLP  60
YQSSQFVHYP SDSNLAEMVP KIPAFGNESY SELVNTFPLQ EQLRGANCYA NYVKNRGIST  120
EGECQISGEG PVEVSPNGKR KISENHSLSN ANKNVEGELQ KAPSRDSSDC SKEQDGGKRH  180
KTDQNVSSNL RNKQAGKQVK DDSDGGEPPK DNYVHVRAKR GQATNSHSLA ERVRRERISE  240
RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEL NFDIDRILSK  300
EMLHQQTSNA ALLGLGPGLS SSLPFPGISH GSFAGIPATT PPFHPLPQNV WDNELQSLLQ  360
MGFDSTSSMN NMGPNGRSKL DL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071676.10.0PREDICTED: transcription factor bHLH74
RefseqXP_015071677.10.0PREDICTED: transcription factor bHLH74
RefseqXP_015071678.10.0PREDICTED: transcription factor bHLH74
RefseqXP_015071679.10.0PREDICTED: transcription factor bHLH74
TrEMBLK4BUI50.0K4BUI5_SOLLC; Uncharacterized protein
STRINGSolyc04g077480.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-64bHLH family protein